Found 44 results
Author Keyword Title [ Type(Desc)] Year
Book Chapter
R. Vega Thurber, Methods in Viral Metagenomics, in Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats, 2011, pp. 15–24.
Journal Article
R. M. Welsh, Rosales, S. M., Zaneveld, J. R., Payet, J. P., McMinds, R., Hubbs, S. L., and Vega-Thurber, R. L., Alien vs. predator: bacterial challenge alters coral microbiomes unless controlled by Halobacteriovorax predators., PeerJ, vol. 5, 2017.
R. Vega Thurber and Epel, D., Apoptosis in early development of the sea urchin, Strongylocentrotus purpuratus, Developmental biology, vol. 303, no. 1, pp. 336-46, 2007.
R. M. Welsh, Zaneveld, J. R., Rosales, S. M., Payet, J. P., Burkepile, D. E., and Vega-Thurber, R. L., Bacterial predation in a marine host-associated microbiome, The ISME journal, 2015.
C. Desnues, Rodriguez-Brito, B., Rayhawk, S., Kelley, S., Tran, T., Haynes, M., Liu, H., Furlan, M., Wegley, L., Chau, B., Ruan, Y., Hall, D., Angly, F. E., Edwards, R. A., Li, L., Thurber, R. Vega, R Reid, P., Siefert, J., Souza, V., Valentine, D. L., Swan, B. K., Breitbart, M., and Rohwer, F., Biodiversity and biogeography of phages in modern stromatolites and thrombolites, Nature, vol. 452, pp. 340–343, 2008.
S. M. Rosales and Vega-Thurber, R. L., Brain meta-transcriptomics from harbor seals to infer the role of the microbiome and virome in a stranding event, PloS one, vol. 10, 2015.
S. M. Rosales and Vega-Thurber, R. L., Brain transcriptomes of harbor seals demonstrate gene expression patterns of animals undergoing a metabolic disease and a viral infection, PeerJ, vol. 4, p. e2819, 2016.
R. L. Vega-Thurber, Burkepile, D. E., Fuchs, C., Shantz, A. A., McMinds, R., and Zaneveld, J. R., Chronic nutrient enrichment increases prevalence and severity of coral disease and bleaching, Global Change Biology, vol. 20, pp. 544–554, 2014.
C. A. Burge, Friedman, C. S., Getchell, R., House, M., Lafferty, K. D., Mydlarz, L. D., Prager, K. C., Sutherland, K. P., Renault, T., Kiryu, I., and Vega-Thurber, R. L., Complementary approaches to diagnosing marine diseases: a union of the modern and the classic, Philosophical Transactions of the Royal Society of London B: Biological Sciences, vol. 371, 2016.
R. Vega Thurber, Current insights into phage biodiversity and biogeography, Current Opinion in Microbiology, vol. 12, pp. 582–587, 2009.
M. E. Brandt, Smith, T. B., Correa, A. M. S., and Vega-Thurber, R. L., Disturbance driven colony fragmentation as a driver of a coral disease outbreak, PloS one, vol. 8, no. 2, p. e57164, 2013.
E. C. Shaver, Shantz, A. A., McMinds, R., Burkepile, D. E., Vega-Thurber, R. L., and Silliman, B. R., Effects of predation and nutrient enrichment on the success and microbiome of a foundational coral, Ecology, 2017.
T. Smital, Luckenbach, T., Sauerborn, R., Hamdoun, A. M., Thurber, R. Vega, and Epel, D., Emerging contaminants–pesticides, PPCPs, microbial degradation products and natural substances as inhibitors of multixenobiotic defense in aquatic organisms, Mutation Research, vol. 552, pp. 101–117, 2004.
E. A. Dinsdale, Edwards, R. A., Hall, D., Angly, F. E., Breitbart, M., Brulc, J. M., Furlan, M., Desnues, C., Haynes, M., Li, L., McDaniel, L., Moran, M. Ann, Nelson, K. E., Nilsson, C., Olson, R., Paul, J., Brito, B. Rodriguez, Ruan, Y., Swan, B. K., Stevens, R., Valentine, D. L., Thurber, R. Vega, Wegley, L., White, B. A., and Rohwer, F. L., Functional metagenomic profiling of nine biomes, Nature, vol. 452, pp. 629–632, 2008.
T. D. Ainsworth, Thurber, R. Vega, and Gates, R. D., The future of coral reefs: a microbial perspective, Trends in Ecology & Evolution, vol. 25, pp. 233–240, 2010.
F. E. Angly, Willner, D., Prieto-Davó, A., Edwards, R. A., Schmieder, R., Vega-Thurber, R., Antonopoulos, D. A., Barott, K., Cottrell, M. T., Desnues, C., Dinsdale, E. A., Furlan, M., Haynes, M., Henn, M. R., Hu, Y., Kirchman, D. L., McDole, T., McPherson, J. D., Meyer, F., R Miller, M., Mundt, E., Naviaux, R. K., Rodriguez-Mueller, B., Stevens, R., Wegley, L., Zhang, L., Zhu, B., and Rohwer, F., The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes, PLoS computational biology, vol. 5, no. 12, p. e1000593, 2009.
J. R. R. Zaneveld and Vega-Thurber, R. L., Hidden state prediction: a modification of classic ancestral state reconstruction algorithms helps unravel complex symbioses, Frontiers in Microbiology, vol. 5, p. 431, 2014.
R. V. Thurber, Haynes, M., Breitbart, M., Wegley, L., and Rohwer, F., Laboratory procedures to generate viral metagenomes, Nature Protocols, vol. 4, pp. 470–483, 2009.
R. Vega Thurber, Burkepile, D. E., Correa, A. M. S., Thurber, A. R., Shantz, A. A., Welsh, R., Pritchard, C., and Rosales, S., Macroalgae decrease growth and alter microbial community structure of the reef-building coral, Porites astreoides, PloS one, vol. 7, no. 9, p. e44246, 2012.
R. L. Vega Thurber, Barott, K. L., Hall, D., Liu, H., Rodriguez-Mueller, B., Desnues, C., Edwards, R. A., Haynes, M., Angly, F. E., Wegley, L., and Rohwer, F. L., Metagenomic analysis indicates that stressors induce production of herpes-like viruses in the coral Porites compressa, Proceedings of the National Academy of Sciences of the United States of America, vol. 105, no. 47, pp. 18413-8, 2008.
R. Vega Thurber, Willner-Hall, D., Rodriguez-Mueller, B., Desnues, C., Edwards, R. A., Angly, F., Dinsdale, E., Kelly, L., and Rohwer, F., Metagenomic analysis of stressed coral holobionts, Environmental microbiology, vol. 11, no. 8, pp. 2148-63, 2009.
D. Willner, Thurber, R. Vega, and Rohwer, F., Metagenomic signatures of 86 microbial and viral metagenomes, Environmental Microbiology, vol. 11, pp. 1752–1766, 2009.
A. S. Bourque, Vega-Thurber, R. L., and Fourqurean, J. W., Microbial community structure and dynamics in restored subtropical seagrass sediments, Aquatic Microbial Ecology, vol. 74, no. 1, 2015.
E. A. Dinsdale, Pantos, O., Smriga, S., Edwards, R. A., Angly, F. E., Wegley, L., Hatay, M., Hall, D., Brown, E., Haynes, M., Krause, L., Sala, E., Sandin, S. A., Thurber, R. Vega, Willis, B. L., Azam, F., Knowlton, N., and Rohwer, F. L., Microbial ecology of four coral atolls in the Northern Line Islands, PLoS ONE, vol. 3, p. e1584, 2008.
S. Joseph Bryson, Thurber, A. R., Correa, A., Orphan, V. J., and Vega-Thurber, R. L., A novel sister clade to the enterobacteria microviruses (family Microviridae) identified in methane seep sediments, Environmental Microbiology, 2015.