Found 60 results
Author Keyword Title [ Type(Desc)] Year
Book Chapter
R. Vega Thurber, Methods in Viral Metagenomics, in Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats, 2011, pp. 15–24.
Journal Article
R. M. Welsh, Rosales, S. M., Zaneveld, J. R., Payet, J. P., McMinds, R., Hubbs, S. L., and Vega-Thurber, R. L., Alien vs. predator: bacterial challenge alters coral microbiomes unless controlled by Halobacteriovorax predators., PeerJ, vol. 5, 2017.
R. Vega Thurber and Epel, D., Apoptosis in early development of the sea urchin, Strongylocentrotus purpuratus, Developmental biology, vol. 303, no. 1, pp. 336-46, 2007.
R. M. Welsh, Zaneveld, J. R., Rosales, S. M., Payet, J. P., Burkepile, D. E., and Vega-Thurber, R. L., Bacterial predation in a marine host-associated microbiome, The ISME journal, 2015.
C. Desnues, Rodriguez-Brito, B., Rayhawk, S., Kelley, S., Tran, T., Haynes, M., Liu, H., Furlan, M., Wegley, L., Chau, B., Ruan, Y., Hall, D., Angly, F. E., Edwards, R. A., Li, L., Thurber, R. Vega, R Reid, P., Siefert, J., Souza, V., Valentine, D. L., Swan, B. K., Breitbart, M., and Rohwer, F., Biodiversity and biogeography of phages in modern stromatolites and thrombolites, Nature, vol. 452, pp. 340–343, 2008.
S. M. Rosales and Vega-Thurber, R. L., Brain meta-transcriptomics from harbor seals to infer the role of the microbiome and virome in a stranding event, PloS one, vol. 10, 2015.
S. M. Rosales and Vega-Thurber, R. L., Brain transcriptomes of harbor seals demonstrate gene expression patterns of animals undergoing a metabolic disease and a viral infection, PeerJ, vol. 4, p. e2819, 2016.
R. L. Vega-Thurber, Burkepile, D. E., Fuchs, C., Shantz, A. A., McMinds, R., and Zaneveld, J. R., Chronic nutrient enrichment increases prevalence and severity of coral disease and bleaching, Global Change Biology, vol. 20, pp. 544–554, 2014.
C. A. Burge, Friedman, C. S., Getchell, R., House, M., Lafferty, K. D., Mydlarz, L. D., Prager, K. C., Sutherland, K. P., Renault, T., Kiryu, I., and Vega-Thurber, R. L., Complementary approaches to diagnosing marine diseases: a union of the modern and the classic, Philosophical Transactions of the Royal Society of London B: Biological Sciences, vol. 371, 2016.
J. F. Pollock and McMinds, R., Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny, Nature Communications, vol. 9, 2018.
L. Wang, Corals and Their Microbiomes Are Differentially Affected by Exposure to Elevated Nutrients and a Natural Thermal Anomaly, Frontiers in Marine Science, vol. 5, 2018.
R. Vega Thurber, Current insights into phage biodiversity and biogeography, Current Opinion in Microbiology, vol. 12, pp. 582–587, 2009.
M. M. Rice and Maher, R. L., Different nitrogen sources speed recovery from corallivory and uniquely alter the microbiome of a reef-building coral, PeerJ, vol. 7, 2019.
M. E. Brandt, Smith, T. B., Correa, A. M. S., and Vega-Thurber, R. L., Disturbance driven colony fragmentation as a driver of a coral disease outbreak, PloS one, vol. 8, no. 2, p. e57164, 2013.
S. M. Rosales and Thurber, R. Vega, Draft Genome Sequence of Phocine Herpesvirus 1 Isolated from the Brain of a Harbor Seal., Microbiol Resour Announc, vol. 8, no. 14, 2019.
E. C. Shaver, Shantz, A. A., McMinds, R., Burkepile, D. E., Vega-Thurber, R. L., and Silliman, B. R., Effects of predation and nutrient enrichment on the success and microbiome of a foundational coral, Ecology, 2017.
T. Smital, Luckenbach, T., Sauerborn, R., Hamdoun, A. M., Thurber, R. Vega, and Epel, D., Emerging contaminants–pesticides, PPCPs, microbial degradation products and natural substances as inhibitors of multixenobiotic defense in aquatic organisms, Mutation Research, vol. 552, pp. 101–117, 2004.
G. G and Tara Pacific Consortium, Expanding Tara Oceans protocols for underway, ecosystemic sampling of the ocean-atmosphere interface during Tara Pacific expedition (2016-18), Frontiers in Marine Science, 2019.
E. A. Dinsdale, Edwards, R. A., Hall, D., Angly, F. E., Breitbart, M., Brulc, J. M., Furlan, M., Desnues, C., Haynes, M., Li, L., McDaniel, L., Moran, M. Ann, Nelson, K. E., Nilsson, C., Olson, R., Paul, J., Brito, B. Rodriguez, Ruan, Y., Swan, B. K., Stevens, R., Valentine, D. L., Thurber, R. Vega, Wegley, L., White, B. A., and Rohwer, F. L., Functional metagenomic profiling of nine biomes, Nature, vol. 452, pp. 629–632, 2008.
T. D. Ainsworth, Thurber, R. Vega, and Gates, R. D., The future of coral reefs: a microbial perspective, Trends in Ecology & Evolution, vol. 25, pp. 233–240, 2010.
F. E. Angly, Willner, D., Prieto-Davó, A., Edwards, R. A., Schmieder, R., Vega-Thurber, R., Antonopoulos, D. A., Barott, K., Cottrell, M. T., Desnues, C., Dinsdale, E. A., Furlan, M., Haynes, M., Henn, M. R., Hu, Y., Kirchman, D. L., McDole, T., McPherson, J. D., Meyer, F., R Miller, M., Mundt, E., Naviaux, R. K., Rodriguez-Mueller, B., Stevens, R., Wegley, L., Zhang, L., Zhu, B., and Rohwer, F., The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes, PLoS computational biology, vol. 5, no. 12, p. e1000593, 2009.
J. R. R. Zaneveld and Vega-Thurber, R. L., Hidden state prediction: a modification of classic ancestral state reconstruction algorithms helps unravel complex symbioses, Frontiers in Microbiology, vol. 5, p. 431, 2014.
L. G. E. Wilkins, Leray, M., O'Dea, A., Yuen, B., Peixoto, R. S., Pereira, T. J., Bik, H. M., Coil, D. A., J Duffy, E., Herre, E. Allen, Lessios, H. A., Lucey, N. M., Mejia, L. C., Rasher, D. B., Sharp, K. H., Sogin, E. M., Thacker, R. W., Thurber, R. Vega, Wcislo, W. T., Wilbanks, E. G., and Eisen, J. A., Host-associated microbiomes drive structure and function of marine ecosystems., PLoS Biol, vol. 17, no. 11, p. e3000533, 2019.
R. V. Thurber, Haynes, M., Breitbart, M., Wegley, L., and Rohwer, F., Laboratory procedures to generate viral metagenomes, Nature Protocols, vol. 4, pp. 470–483, 2009.
D. E. Burkepile and Thurber, R. L. Vega, The Long Arm of Species Loss: How Will Defaunation Disrupt Ecosystems Down to the Microbial Scale?, BioScience, vol. 69, pp. 443-454, 2019.

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